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SRX14185176: Other Sequencing of Klebsiella pneumoniae
1 ILLUMINA (Illumina HiSeq 4000) run: 2.2M spots, 659.9M bases, 274.7Mb downloads

External Id: MMMOSRA:ecfd5727-2ef2-4cd5-86b1-86ff6441213e
Submitted by: Modernising Medical Microbiology, NDM, Oxford University (ModMedMicOxford)
Study: Patient and environmental blaKPC-Enterobacterales diversity across six wards in a UK hospital over 6-12 months
show Abstracthide Abstract
This study by the TRACE (Tracking Carbapenemase-producing Enterobacteriaceae) Investigators' Group (Manchester hospitals; University of Oxford; Public Health England) investigated environmental and patient blaKPC-Enterobacterales diversity using systematic regular sampling of 349 wastewater-associated environmental sites across six wards, and corresponding carbapenem-resistant isolates from a subset of patients that were admitted to these wards over the study timeframe. To evaluate within-niche diversity, up to five isolates from each niche were sequenced at any given sampling timepoint.
Sample: Sequencing of isolates from wastewater sites and patients in 2016-2017
SAMN25988523 • SRS12026353 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 4000
Strategy: WGS
Source: GENOMIC
Selection: unspecified
Layout: SINGLE
Runs: 1 run, 2.2M spots, 659.9M bases, 274.7Mb
Run# of Spots# of BasesSizePublished
SRR180322022,203,305659.9M274.7Mb2022-02-22

ID:
20043504

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